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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10012412m | ||||||||
Common Name | CICLE_v10012016mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 282aa MW: 32733.4 Da PI: 9.1838 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.1 | 7.6e-06 | 10 | 34 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ dC+ s++rk++L+rH+ +H Ciclev10012412m 10 FRCSvdDCHASYRRKDHLTRHLLRH 34 89*********************99 PP | |||||||
2 | zf-C2H2 | 15.7 | 4.4e-05 | 39 | 64 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ F+ + n+krH + H Ciclev10012412m 39 FKCPieNCNREFTIQGNMKRHVKElH 64 89********************9986 PP | |||||||
3 | zf-C2H2 | 18.6 | 5.1e-06 | 79 | 103 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ Cgk+F+ s L++H +H Ciclev10012412m 79 YICQeiGCGKVFKYASKLRQHEDSH 103 89*******************9888 PP | |||||||
4 | zf-C2H2 | 15.8 | 3.9e-05 | 170 | 194 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C sFs++snL++H + H Ciclev10012412m 170 KCQfkGCLLSFSTNSNLRQHVKAvH 194 688889**************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.08E-7 | 1 | 36 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-9 | 7 | 36 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.827 | 10 | 39 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0066 | 10 | 34 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 12 | 34 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.0E-6 | 37 | 65 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-6 | 37 | 61 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0015 | 39 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.637 | 39 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 65 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.3E-8 | 71 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.72E-5 | 75 | 103 | No hit | No description |
SMART | SM00355 | 0.0033 | 79 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.24 | 79 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 81 | 103 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.6 | 111 | 136 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 113 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 20 | 139 | 160 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.2E-6 | 150 | 191 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.17E-8 | 151 | 207 | No hit | No description |
SMART | SM00355 | 0.011 | 169 | 194 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.928 | 169 | 199 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 171 | 194 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 8.6 | 200 | 225 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 202 | 226 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MLSHLLERPF RCSVDDCHAS YRRKDHLTRH LLRHQGKLFK CPIENCNREF TIQGNMKRHV 60 KELHHEGTTS TDSGDQKQYI CQEIGCGKVF KYASKLRQHE DSHVNLDSVE AFCSAPGCMK 120 YFTNKQCLEA HIRSCHQYIP CEICGSMQLK KNIKRHVRTH EARDLSERIK CQFKGCLLSF 180 STNSNLRQHV KAVHYEIKPF ACSFFGCGMR FAFKHVRDNH EKSGHHVYSS GDFVESDERF 240 RSRERGGRKR KCPTVEMLIR KRVTLPSPTQ TCNTKIDDTP D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 4e-12 | 1 | 142 | 34 | 165 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 4e-12 | 1 | 142 | 34 | 165 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430924.1 | 0.0 | hypothetical protein CICLE_v10012016mg | ||||
Refseq | XP_006430925.1 | 0.0 | hypothetical protein CICLE_v10012016mg | ||||
Swissprot | Q84MZ4 | 2e-90 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | V4SYP1 | 0.0 | V4SYP1_9R | ||||
TrEMBL | V4UWQ4 | 0.0 | V4UWQ4_9R | ||||
STRING | POPTR_0013s11300.1 | 1e-136 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.1 | 7e-84 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10012412m |
Entrez Gene | 18038914 |